If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ), 'gf_id' => 'HOM05D000828', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000828' ), 'data_identifier' => 'HOM05D000828', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000828', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10690' => 'bna', 'A01p10700' => 'bna', 'A01p10720' => 'bna', 'A03p51470' => 'bna', 'A03p51480' => 'bna', 'A05p34530' => 'bna', 'A06p06650' => 'bna', 'A06p46330' => 'bna', 'A08p13940' => 'bna', 'A09p21950' => 'bna', 'Aa31LG1G4930' => 'aar', 'Aa31LG2G10820' => 'aar', 'Aa31LG6G1400' => 'aar', 'Aa31LG6G1420' => 'aar', 'Aa31LG8G2090' => 'aar', 'Aa31LG9G7230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3655' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4086' => 'aag', 'Actinidia12582' => 'ach', 'Actinidia16788' => 'ach', 'Actinidia16789' => 'ach', 'Actinidia18801' => 'ach', 'Actinidia20054' => 'ach', 'Actinidia29091' => 'ach', 'Ah.02g115640' => 'amhyb', 'Ah.02g115650' => 'amhyb', 'Ah.02g117590' => 'amhyb', 'Ah.05g166790' => 'amhyb', 'Ah.06g185430' => 'amhyb', 'Ah.06g188610' => 'amhyb', 'Ah.12g058750' => 'amhyb', 'AL1G20580' => 'aly', 'AL2G17890' => 'aly', 'AL3G27200' => 'aly', 'AL7G35560' => 'aly', 'AL7G35570' => 'aly', 'AL7G35610' => 'aly', 'AL8G12750' => 'aly', 'Aqoxy1G02025' => 'aox', 'Aqoxy1G02026' => 'aox', 'Aqoxy1G02028' => 'aox', 'Aqoxy1G02029' => 'aox', 'Aqoxy1G02030' => 'aox', 'Aqoxy1G02032' => 'aox', 'Aqoxy1G03791' => 'aox', 'Aqoxy1G03792' => 'aox', 'Aqoxy1G03794' => 'aox', 'Aqoxy1G03959' => 'aox', 'Aqoxy1G04039' => 'aox', 'Aqoxy2G00857' => 'aox', 'Aqoxy4G00302' => 'aox', 'Aqoxy4G02525' => 'aox', 'Aqoxy4G02526' => 'aox', 'Aqoxy4G02527' => 'aox', 'Aqoxy6G00246' => 'aox', 'Aqoxy6G01876' => 'aox', 'Aqoxy6G02454' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0HHX3D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5PG8C6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BC7D9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DXWW21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6CWZU' => 'arhy', 'AT1G09950' => 'ath', 'AT1G58330' => 'ath', 'AT3G14880' => 'ath', 'AT4G18650' => 'ath', 'AT4G18660' => 'ath', 'AT4G18680' => 'ath', 'AT4G18690' => 'ath', 'AT5G45830' => 'ath', 'ATR0012G035' => 'atr', 'ATR0012G056' => 'atr', 'Atru.chr10.1647' => 'acertr', 'Atru.chr10.1648' => 'acertr', 'Atru.chr2.2120' => 'acertr', 'Atru.chr4.1098' => 'acertr', 'Atru.chr4.1104' => 'acertr', 'Atru.chr8.2263' => 'acertr', 'AUR62000546' => 'cqu', 'AUR62000547' => 'cqu', 'AUR62000548' => 'cqu', 'AUR62006897' => 'cqu', 'AUR62006898' => 'cqu', 'AUR62006899' => 'cqu', 'AUR62006900' => 'cqu', 'AUR62027695' => 'cqu', 'AUR62030488' => 'cqu', 'AUR62030804' => 'cqu', 'AUR62031223' => 'cqu', 'AUR62037217' => 'cqu', 'BcaB06g25329' => 'bca', 'BcaB07g30867' => 'bca', 'BcaC01g00557' => 'bca', 'BcaC04g21743' => 'bca', 'BcaC05g24825' => 'bca', 'BcaC05g24826' => 'bca', 'BcaC05g29011' => 'bca', 'BcaC06g31511' => 'bca', 'BcaC06g34393' => 'bca', 'BcaC07g41852' => 'bca', 'BcaC09g51463' => 'bca', 'BcaC09g51464' => 'bca', 'BcaC09g51466' => 'bca', 'BcaNung02667' => 'bca', 'BcaNung05500' => 'bca', 'BolC1t01239H' => 'bol', 'BolC1t01240H' => 'bol', 'BolC1t01242H' => 'bol', 'BolC1t01244H' => 'bol', 'BolC3t20410H' => 'bol', 'BolC5t29559H' => 'bol', 'BolC5t33918H' => 'bol', 'BolC7t43454H' => 'bol', 'BolC7t45493H' => 'bol', 'BolC8t52455H' => 'bol', 'BolC9t55681H' => 'bol', 'BraA01t01015Z' => 'bra', 'BraA01t01016Z' => 'bra', 'BraA01t01018Z' => 'bra', 'BraA03t14231Z' => 'bra', 'BraA05t22273Z' => 'bra', 'BraA06t23879Z' => 'bra', 'BraA06t27494Z' => 'bra', 'BraA08t33382Z' => 'bra', 'BraA09t37802Z' => 'bra', 'BraA09t41870Z' => 'bra', 'C01p12620' => 'bna', 'C01p12640' => 'bna', 'C01p12650' => 'bna', 'C01p12670' => 'bna', 'C03p81420' => 'bna', 'C05p08060' => 'bna', 'C05p52280' => 'bna', 'C07p29120' => 'bna', 'C07p49910' => 'bna', 'C08p49200' => 'bna', 'C09p28110' => 'bna', 'CAN.G1156.37' => 'can', 'CAN.G1286.7' => 'can', 'CAN.G1286.8' => 'can', 'CAN.G133.9' => 'can', 'CAN.G243.11' => 'can', 'CAN.G370.100' => 'can', 'CAN.G370.101' => 'can', 'CAN.G370.94' => 'can', 'CAN.G370.95' => 'can', 'CAN.G370.97' => 'can', 'CAN.G375.19' => 'can', 'CAN.G375.20' => 'can', 'CAN.G375.22' => 'can', 'CAN.G411.93' => 'can', 'CAN.G723.37' => 'can', 'CAN.G809.75' => 'can', 'CANSAT35G1227' => 'cansat', 'CANSAT35G1928' => 'cansat', 'CARHR010070' => 'chi', 'CARHR089820' => 'chi', 'CARHR176140' => 'chi', 'CARHR225510' => 'chi', 'CARHR225520' => 'chi', 'CARHR225540' => 'chi', 'CARHR225550' => 'chi', 'Carub.0001s0935' => 'cru', 'Carub.0002s0622' => 'cru', 'Carub.0003s1454' => 'cru', 'Carub.0007s2254' => 'cru', 'Carub.0007s2256' => 'cru', 'Carub.0007s2257' => 'cru', 'Carub.0008s0213' => 'cru', 'Ca_00445_v3' => 'car', 'Ca_03961_v3' => 'car', 'Ca_17612_v3' => 'car', 'Ca_26614_v3' => 'car', 'Cc02_g15140' => 'ccan', 'Cc02_g15150' => 'ccan', 'Cc05_g11030' => 'ccan', 'Cc06_g01190' => 'ccan', 'Cc10_g12050' => 'ccan', 'CDE02G3399' => 'cde', 'CDE03G0375' => 'cde', 'CDE04G2092' => 'cde', 'CDE06G0175' => 'cde', 'CDE06G0249' => 'cde', 'CDE06G0470' => 'cde', 'CDE06G1705' => 'cde', 'CDE10G0387' => 'cde', 'CDE10G0747' => 'cde', 'Cfa017191' => 'cfa', 'Cfa019558' => 'cfa', 'Ciclev10002078m.g' => 'ccl', 'Ciclev10003662m.g' => 'ccl', 'Ciclev10012620m.g' => 'ccl', 'Ciclev10017869m.g' => 'ccl', 'Ciclev10017912m.g' => 'ccl', 'Ciclev10022056m.g' => 'ccl', 'CiPaw.03G116000' => 'cil', 'CiPaw.03G116100' => 'cil', 'CiPaw.04G077600' => 'cil', 'CiPaw.09G070800' => 'cil', 'CiPaw.09G210800' => 'cil', 'CiPaw.10G060100' => 'cil', 'CiPaw.10G060200' => 'cil', 'CiPaw.10G157300' => 'cil', 'CiPaw.11G159900' => 'cil', 'ClCG01G023790' => 'cla', 'ClCG03G007610' => 'cla', 'ClCG03G007620' => 'cla', 'ClCG04G001590' => 'cla', 'ClCG08G011950' => 'cla', 'ClCG10G022260' => 'cla', 'ClCG11G017280' => 'cla', 'COL.COLO4_14513' => 'col', 'COL.COLO4_17538' => 'col', 'COL.COLO4_31273' => 'col', 'COL.COLO4_31275' => 'col', 'COL.COLO4_31276' => 'col', 'COL.COLO4_35349' => 'col', 'Cpa.g.c34917' => 'cpa', 'Cpa.g.sc11.99' => 'cpa', 'Cpa.g.sc37.34' => 'cpa', 'Cpa.g.sc394.4' => 'cpa', 'Cpa.g.sc7.81' => 'cpa', 'Cpa.g.sc77.13' => 'cpa', 'CsaV3_1G033270' => 'csa', 'CsaV3_3G033620' => 'csa', 'CsaV3_4G030930' => 'csa', 'CsaV3_4G032930' => 'csa', 'CsaV3_6G050950' => 'csa', 'CSS0004670' => 'camsi', 'CSS0007731' => 'camsi', 'CSS0012967' => 'camsi', 'CSS0030663' => 'camsi', 'CSS0046843' => 'camsi', 'CSS0050268' => 'camsi', 'DCAR_009598' => 'dca', 'DCAR_011850' => 'dca', 'DCAR_013177' => 'dca', 'DCAR_018692' => 'dca', 'DCAR_019598' => 'dca', 'DCAR_019599' => 'dca', 'DCAR_019600' => 'dca', 'DCAR_021026' => 'dca', 'DCAR_024013' => 'dca', 'DCAR_028859' => 'dca', 'Dinv01495' => 'din', 'Dinv10613' => 'din', 'Dinv14997' => 'din', 'Dinv16788' => 'din', 'Dinv18367' => 'din', 'Dinv30331' => 'din', 'Dinv40694' => 'din', 'Duzib106G0024' => 'dzi', 'Duzib116G0815' => 'dzi', 'Duzib213G0788' => 'dzi', 'Duzib235G1498' => 'dzi', 'Duzib264G0630' => 'dzi', 'ECA233G2612' => 'eca', 'ECA236G0967' => 'eca', 'ECA236G2252' => 'eca', 'ECA240G0079' => 'eca', 'ECA246G0755' => 'eca', 'ECA247G1555' => 'eca', 'ECA248G0624' => 'eca', 'EL10Ac1g02303' => 'bvu', 'EL10Ac4g09670' => 'bvu', 'EL10Ac4g09671' => 'bvu', 'EL10Ac5g12546' => 'bvu', 'EL10Ac8g20585' => 'bvu', 'Eucgr.D00482' => 'egr', 'Eucgr.F00466' => 'egr', 'Eucgr.F03274' => 'egr', 'Eucgr.F03275' => 'egr', 'Eucgr.H05080' => 'egr', 'Eucgr.K02977' => 'egr', 'FAN04G0343' => 'fan', 'FAN08G2417' => 'fan', 'FAN09G0086' => 'fan', 'FAN09G1603' => 'fan', 'FAN11G0162' => 'fan', 'FAN11G2205' => 'fan', 'FAN11G4025' => 'fan', 'FAN14G0600' => 'fan', 'FAN16G0165' => 'fan', 'FAN16G0362' => 'fan', 'FAN16G2164' => 'fan', 'FAN18G2598' => 'fan', 'FAN19G0657' => 'fan', 'FAN19G1830' => 'fan', 'FAN19G2220' => 'fan', 'FAN19G2682' => 'fan', 'FAN21G2654' => 'fan', 'FAN21G3210' => 'fan', 'FAN23G1352' => 'fan', 'FAN25G1080' => 'fan', 'FAN25G1266' => 'fan', 'FAN25G3729' => 'fan', 'FAN26G0989' => 'fan', 'FAN26G1171' => 'fan', 'FAN26G1761' => 'fan', 'FAN26G2657' => 'fan', 'FAN28G2246' => 'fan', 'FvH4_1g25300' => 'fve', 'FvH4_1g25360' => 'fve', 'FvH4_1g25370' => 'fve', 'FvH4_1g25372' => 'fve', 'FvH4_3g07640' => 'fve', 'FvH4_3g07650' => 'fve', 'FvH4_3g18230' => 'fve', 'FvH4_6g11270' => 'fve', 'Glyma.05G195200' => 'gma', 'Glyma.06G090900' => 'gma', 'Glyma.07G151600' => 'gma', 'Glyma.13G228600' => 'gma', 'Glyma.13G269500' => 'gma', 'Glyma.15G083900' => 'gma', 'Glyma.18G202900' => 'gma', 'Gohir.A03G169100' => 'ghi', 'Gohir.A04G092100' => 'ghi', 'Gohir.A05G215100' => 'ghi', 'Gohir.A08G234200' => 'ghi', 'Gohir.A09G006200' => 'ghi', 'Gohir.A10G036300' => 'ghi', 'Gohir.A11G310700' => 'ghi', 'Gohir.D02G192300' => 'ghi', 'Gohir.D04G131300' => 'ghi', 'Gohir.D05G157250' => 'ghi', 'Gohir.D05G218400' => 'ghi', 'Gohir.D08G254600' => 'ghi', 'Gohir.D09G005300' => 'ghi', 'Gohir.D10G037000' => 'ghi', 'Gohir.D11G327100' => 'ghi', 'Gorai.004G271700' => 'gra', 'Gorai.005G215100' => 'gra', 'Gorai.006G006900' => 'gra', 'Gorai.007G358000' => 'gra', 'Gorai.009G161700' => 'gra', 'Gorai.009G225400' => 'gra', 'Gorai.011G038900' => 'gra', 'Gorai.012G115200' => 'gra', 'GSVIVG01021229001' => 'vvi', 'GSVIVG01022365001' => 'vvi', 'HanXRQChr01g0017071' => 'han', 'HanXRQChr01g0017081' => 'han', 'HanXRQChr04g0106761' => 'han', 'HanXRQChr04g0106771' => 'han', 'HanXRQChr04g0106781' => 'han', 'HanXRQChr04g0106791' => 'han', 'HanXRQChr04g0106801' => 'han', 'HanXRQChr04g0106811' => 'han', 'HanXRQChr04g0106831' => 'han', 'HanXRQChr04g0116961' => 'han', 'HanXRQChr04g0119221' => 'han', 'HanXRQChr05g0147981' => 'han', 'HanXRQChr06g0183741' => 'han', 'HanXRQChr07g0203231' => 'han', 'HanXRQChr07g0203321' => 'han', 'HanXRQChr09g0243321' => 'han', 'HanXRQChr09g0255081' => 'han', 'HanXRQChr11g0330981' => 'han', 'HanXRQChr12g0378751' => 'han', 'HanXRQChr12g0380481' => 'han', 'HanXRQChr13g0388691' => 'han', 'HanXRQChr13g0389491' => 'han', 'HanXRQChr15g0464061' => 'han', 'HanXRQChr15g0468941' => 'han', 'HanXRQChr15g0468961' => 'han', 'HanXRQChr15g0476191' => 'han', 'HanXRQChr15g0476241' => 'han', 'HanXRQChr15g0476251' => 'han', 'Haze_06212' => 'cav', 'Haze_06213' => 'cav', 'Haze_21020' => 'cav', 'Haze_25349' => 'cav', 'Hma1.2p1_0134F.1_g061590' => 'hma', 'Hma1.2p1_0215F.1_g090870' => 'hma', 'Hma1.2p1_0215F.1_g090900' => 'hma', 'Hma1.2p1_0362F.1_g136400' => 'hma', 'Hma1.2p1_1742F.1_g300150' => 'hma', 'HPP92_012046' => 'vpl', 'Hund14285' => 'sun', 'Lalb_Chr01g0023021' => 'lal', 'Lalb_Chr11g0064741' => 'lal', 'Lalb_Chr12g0202961' => 'lal', 'Lalb_Chr15g0086121' => 'lal', 'Lalb_Chr18g0054581' => 'lal', 'Lalb_Chr19g0124611' => 'lal', 'Lalb_Chr25g0285841' => 'lal', 'Lalb_Chr25g0285851' => 'lal', 'Lj1A828G18' => 'lonja', 'Lj1g0006880' => 'lja', 'Lj1P1191T47' => 'lonja', 'Lj3g0000024' => 'lja', 'Lj4C80T3' => 'lonja', 'Lj4g0022788' => 'lja', 'Lj6g0001029' => 'lja', 'Lsat_1_v5_gn_1_41301' => 'lsa', 'Lsat_1_v5_gn_1_80501' => 'lsa', 'Lsat_1_v5_gn_1_80521' => 'lsa', 'Lsat_1_v5_gn_1_80561' => 'lsa', 'Lsat_1_v5_gn_2_124540' => 'lsa', 'Lsat_1_v5_gn_2_124560' => 'lsa', 'Lsat_1_v5_gn_5_68961' => 'lsa', 'Lsat_1_v5_gn_6_107860' => 'lsa', 'Lsat_1_v5_gn_6_107880' => 'lsa', 'Lsat_1_v5_gn_7_102580' => 'lsa', 'Lsat_1_v5_gn_7_25200' => 'lsa', 'Lsat_1_v5_gn_8_19160' => 'lsa', 'Lsat_1_v5_gn_9_35200' => 'lsa', 'Lsat_1_v5_gn_9_35220' => 'lsa', 'Lsat_1_v5_gn_9_99780' => 'lsa', 'Lsat_1_v5_gn_9_99800' => 'lsa', 'Manes.03G100500' => 'mes', 'Manes.08G093300' => 'mes', 'Manes.17G056900' => 'mes', 'Manes.17G057000' => 'mes', 'Manes.18G054150' => 'mes', 'Mapoly0002s0029' => 'mpo', 'MBI03_g28303_MAGBIO' => 'mbi', 'MBI05_g04120_MAGBIO' => 'mbi', 'MBI06_g08610_MAGBIO' => 'mbi', 'MBI06_g45399_MAGBIO' => 'mbi', 'MBI07_g09557_MAGBIO' => 'mbi', 'MBI07_g09559_MAGBIO' => 'mbi', 'MD03G1039500' => 'mdo', 'MD03G1243800' => 'mdo', 'MD04G1155800' => 'mdo', 'MD05G1073300' => 'mdo', 'MD05G1299000' => 'mdo', 'MD05G1299100' => 'mdo', 'MD10G1044600' => 'mdo', 'MD11G1040000' => 'mdo', 'MD11G1264300' => 'mdo', 'MD12G1170000' => 'mdo', 'MD14G1136000' => 'mdo', 'MD15G1138000' => 'mdo', 'Medtr2g016330' => 'mtr', 'Medtr2g016370' => 'mtr', 'Medtr2g076140' => 'mtr', 'Medtr7g068860' => 'mtr', 'Medtr8g094690' => 'mtr', 'MELO3C002660.2' => 'cme', 'MELO3C007209.2' => 'cme', 'MELO3C008968.2' => 'cme', 'MELO3C009152.2' => 'cme', 'MELO3C011116.2' => 'cme', 'MELO3C025656.2' => 'cme', 'Migut.A00056' => 'egut', 'Migut.A00650' => 'egut', 'Migut.A00656' => 'egut', 'Migut.A00659' => 'egut', 'Migut.F01399' => 'egut', 'Migut.F01400' => 'egut', 'Migut.H00833' => 'egut', 'Migut.H01436' => 'egut', 'Migut.H01437' => 'egut', 'Migut.H01438' => 'egut', 'Migut.I00366' => 'egut', 'Migut.L00272' => 'egut', 'Migut.L00581' => 'egut', 'Migut.M00704' => 'egut', 'Migut.M00720' => 'egut', 'Migut.M00721' => 'egut', 'Migut.M01026' => 'egut', 'Migut.M01028' => 'egut', 'Migut.N02825' => 'egut', 'Migut.N03276' => 'egut', 'MSTRG.14964' => 'ama', 'Nitab4.5_0000035g0210' => 'nta', 'Nitab4.5_0000167g0250' => 'nta', 'Nitab4.5_0000377g0110' => 'nta', 'Nitab4.5_0000462g0190' => 'nta', 'Nitab4.5_0000496g0170' => 'nta', 'Nitab4.5_0000605g0010' => 'nta', 'Nitab4.5_0000605g0060' => 'nta', 'Nitab4.5_0000797g0150' => 'nta', 'Nitab4.5_0001609g0010' => 'nta', 'Nitab4.5_0002020g0050' => 'nta', 'Nitab4.5_0002111g0010' => 'nta', 'Nitab4.5_0002177g0150' => 'nta', 'Nitab4.5_0002851g0020' => 'nta', 'Nitab4.5_0003711g0010' => 'nta', 'Nitab4.5_0003997g0020' => 'nta', 'Nitab4.5_0004107g0060' => 'nta', 'Nitab4.5_0005748g0010' => 'nta', 'Nitab4.5_0008430g0010' => 'nta', 'Nitab4.5_0008430g0040' => 'nta', 'Nitab4.5_0009343g0020' => 'nta', 'Nitab4.5_0010209g0020' => 'nta', 'Nitab4.5_0011383g0010' => 'nta', 'Nitab4.5_0013297g0010' => 'nta', 'Nitab4.5_0013297g0020' => 'nta', 'Nitab4.5_0014144g0010' => 'nta', 'Nn1g01237' => 'nnu', 'Nn1g04457' => 'nnu', 'Nn1g04459' => 'nnu', 'Nn1g09158' => 'nnu', 'Nn1g09159' => 'nnu', 'Nn1g09160' => 'nnu', 'Nn2g10340' => 'nnu', 'Nn5g30186' => 'nnu', 'Oeu024204.1' => 'oeu', 'Oeu028236.1' => 'oeu', 'Oeu037850.1' => 'oeu', 'Oeu039906.1' => 'oeu', 'Oeu043111.1' => 'oeu', 'Oeu050101.1' => 'oeu', 'Oeu054389.1' => 'oeu', 'Oeu059142.1' => 'oeu', 'Oeu059260.1' => 'oeu', 'Oeu063398.1' => 'oeu', 'Os01g0159000' => 'osa', 'Os01g0306400' => 'osa', 'Os05g0560200' => 'osa', 'Peaxi162Scf00000g06410' => 'pax', 'Peaxi162Scf00009g01526' => 'pax', 'Peaxi162Scf00111g00149' => 'pax', 'Peaxi162Scf00170g00008' => 'pax', 'Peaxi162Scf00170g00121' => 'pax', 'Peaxi162Scf00170g00122' => 'pax', 'Peaxi162Scf00170g00129' => 'pax', 'Peaxi162Scf00284g01040' => 'pax', 'Peaxi162Scf00353g00023' => 'pax', 'Peaxi162Scf00574g00033' => 'pax', 'Peaxi162Scf00626g00026' => 'pax', 'Peaxi162Scf00734g00029' => 'pax', 'Peaxi162Scf00768g00031' => 'pax', 'Peaxi162Scf00768g00513' => 'pax', 'Peaxi162Scf00854g00031' => 'pax', 'Peaxi162Scf01009g00022' => 'pax', 'PGR004G2145' => 'pgr', 'PGR031G0305' => 'pgr', 'PGR031G0760' => 'pgr', 'PGR031G2683' => 'pgr', 'PGR083G0051' => 'pgr', 'PGR102G0685' => 'pgr', 'PGR102G2234' => 'pgr', 'PGSC0003DMG400004453' => 'stu', 'PGSC0003DMG400004967' => 'stu', 'PGSC0003DMG400007068' => 'stu', 'PGSC0003DMG400010193' => 'stu', 'PGSC0003DMG400011101' => 'stu', 'PGSC0003DMG400011102' => 'stu', 'PGSC0003DMG400015337' => 'stu', 'PGSC0003DMG400023327' => 'stu', 'PGSC0003DMG400026742' => 'stu', 'PGSC0003DMG400028441' => 'stu', 'PGSC0003DMG400028480' => 'stu', 'PGSC0003DMG400028482' => 'stu', 'PGSC0003DMG400038480' => 'stu', 'Phvul.002G275400' => 'pvu', 'Phvul.005G081900' => 'pvu', 'Phvul.006G175000' => 'pvu', 'Phvul.008G097900' => 'pvu', 'Phvul.009G114600' => 'pvu', 'Potri.001G390100' => 'ptr', 'Potri.004G058200' => 'ptr', 'Potri.007G098800' => 'ptr', 'Pp3c11_3190' => 'ppa', 'Pp3c13_11750' => 'ppa', 'Pp3c26_14620' => 'ppa', 'Pp3c2_33230' => 'ppa', 'Pp3c3_9650' => 'ppa', 'Pp3c7_19640' => 'ppa', 'Prupe.1G542200' => 'ppe', 'Prupe.4G062700' => 'ppe', 'Prupe.4G062800' => 'ppe', 'Prupe.4G164300' => 'ppe', 'Prupe.4G280800' => 'ppe', 'Prupe.6G279300' => 'ppe', 'Psat1g197080' => 'psa', 'Psat3g127200' => 'psa', 'Psat5g237680' => 'psa', 'Psat7g043720' => 'psa', 'PSO135G0104' => 'pso', 'PSO170G2137' => 'pso', 'PSO170G2808' => 'pso', 'PSO223G0079' => 'pso', 'PSO339G0646' => 'pso', 'PSO339G4861' => 'pso', 'PSO339G4904' => 'pso', 'PSO384G4235' => 'pso', 'PSO384G4507' => 'pso', 'PSO386G0233' => 'pso', 'PSO407G0082' => 'pso', 'PSO478G1021' => 'pso', 'PSO528G0190' => 'pso', 'PSO541G1490' => 'pso', 'PSO541G3344' => 'pso', 'PSO541G5823' => 'pso', 'PSO675G0520' => 'pso', 'PSO675G4187' => 'pso', 'PSO675G6029' => 'pso', 'PSO675G8829' => 'pso', 'PSO724G0291' => 'pso', 'PSO724G0379' => 'pso', 'PSO724G1069' => 'pso', 'PSO782G4870' => 'pso', 'PSO782G4874' => 'pso', 'QL05p047746' => 'qlo', 'QL05p047773' => 'qlo', 'QL07p035225' => 'qlo', 'QL10p017450' => 'qlo', 'QL10p039976' => 'qlo', 'QL12p029496' => 'qlo', 'RcHm_v2.0_Chr2g0123401' => 'rch', 'RcHm_v2.0_Chr3g0462811' => 'rch', 'RcHm_v2.0_Chr5g0011031' => 'rch', 'RcHm_v2.0_Chr5g0011041' => 'rch', 'RcHm_v2.0_Chr5g0030811' => 'rch', 'RcHm_v2.0_Chr7g0232201' => 'rch', 'RcHm_v2.0_Chr7g0232581' => 'rch', 'Rhsim06G0208500' => 'rsi', 'Rhsim10G0129100' => 'rsi', 'Rhsim10G0129200' => 'rsi', 'Rhsim13G0189400' => 'rsi', 'Sabra04G0037800' => 'sbr', 'Sabra16G0255600' => 'sbr', 'SalBow2G3470' => 'sbo', 'SalBow6G2577' => 'sbo', 'SalBow7G2701' => 'sbo', 'SalBow7G4758' => 'sbo', 'SalBow8G1411' => 'sbo', 'SalBow8G2820' => 'sbo', 'Sc01g0006330' => 'sci', 'Sc05g0007040' => 'sci', 'Sc07g0002470' => 'sci', 'Sc15g0005190' => 'sci', 'Sc16g0009650' => 'sci', 'Sed0008926' => 'sed', 'Sed0009278' => 'sed', 'Sed0012805' => 'sed', 'Sed0013146' => 'sed', 'Sed0016092' => 'sed', 'Sed0018479' => 'sed', 'Sed0024596' => 'sed', 'Sed0025862' => 'sed', 'SGA_v2.0_scaffold12G06103' => 'sas', 'SMO147G0320' => 'smo', 'SMO172G0126' => 'smo', 'SMO271G0144' => 'smo', 'Solyc02g072550.1' => 'sly', 'Solyc02g072560.1' => 'sly', 'Solyc02g072570.2' => 'sly', 'Solyc02g073570.1' => 'sly', 'Solyc02g073580.1' => 'sly', 'Solyc02g076640.1' => 'sly', 'Solyc02g076650.1' => 'sly', 'Solyc03g006120.4' => 'sly', 'Solyc04g076970.3' => 'sly', 'Solyc05g056410.1' => 'sly', 'Solyc07g062380.1' => 'sly', 'Solyc09g005610.4' => 'sly', 'Solyc10g085210.2' => 'sly', 'Solyc12g014300.3' => 'sly', 'Sopen00g014160' => 'spe', 'Sopen02g021520' => 'spe', 'Sopen02g021530' => 'spe', 'Sopen02g021540' => 'spe', 'Sopen02g021560' => 'spe', 'Sopen02g021570' => 'spe', 'Sopen02g021580' => 'spe', 'Sopen03g002130' => 'spe', 'Sopen05g034800' => 'spe', 'Sopen07g030630' => 'spe', 'Sopen09g001510' => 'spe', 'Sopen10g034680' => 'spe', 'Sp1g08610' => 'spa', 'Sp2g10750' => 'spa', 'Sp3g13090' => 'spa', 'Sp7g17390' => 'spa', 'Sp7g17400' => 'spa', 'TAR624G0843' => 'tar', 'TAR624G1056' => 'tar', 'TAR625G0688' => 'tar', 'TAR627G1007' => 'tar', 'TAR628G1544' => 'tar', 'TAR633G1101' => 'tar', 'TAR636G2502' => 'tar', 'THA.LOC104798429' => 'tha', 'THA.LOC104816199' => 'tha', 'THA.LOC104822569' => 'tha', 'Thecc.01G141400' => 'tca', 'Thecc.05G013800' => 'tca', 'Thecc.06G168700' => 'tca', 'Thecc.06G168900' => 'tca', 'Thecc.07G117500' => 'tca', 'Thecc.08G079300' => 'tca', 'Thhalv10001138m.g' => 'esa', 'Thhalv10005017m.g' => 'esa', 'Thhalv10008665m.g' => 'esa', 'Thhalv10022387m.g' => 'esa', 'Thhalv10025925m.g' => 'esa', 'Thhalv10027005m.g' => 'esa', 'Thhalv10027258m.g' => 'esa', 'Thhalv10027388m.g' => 'esa', 'TPR.G13202' => 'tpr', 'TPR.G16032' => 'tpr', 'TPR.G27338' => 'tpr', 'TPR.G28497' => 'tpr', 'TPR.G37298' => 'tpr', 'TPR.G8415' => 'tpr', 'TWI31G1014' => 'twi', 'TWI36G1300' => 'twi', 'TWI38G0070' => 'twi', 'TWI38G0811' => 'twi', 'TWI74G0856' => 'twi', 'unitig_0.g392' => 'ugi', 'unitig_26.g9348' => 'ugi', 'vmacro12769' => 'vma', 'VMungo0540G1747' => 'vmu', 'VMungo1080G1572' => 'vmu', 'VMungo1309G2534' => 'vmu', 'VMungo1383G2197' => 'vmu', 'Zm00001eb123660' => 'zma', 'Zm00001eb130290' => 'zma', 'Zm00001eb152510' => 'zma', 'Zm00001eb223390' => 'zma', 'Zm00001eb295650' => 'zma', 'Zm00001eb339990' => 'zma' ) $gf_id = 'HOM05D000828' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000828' ) $data_identifier = 'HOM05D000828' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 7, 'aox' => (int) 19, 'arhy' => (int) 5, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 16, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 9, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 8, 'gma' => (int) 7, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 2, 'han' => (int) 28, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 8, 'lonja' => (int) 3, 'lja' => (int) 4, 'lsa' => (int) 16, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 20, 'ama' => (int) 1, 'nta' => (int) 25, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 16, 'pgr' => (int) 7, 'stu' => (int) 13, 'pvu' => (int) 5, 'ptr' => (int) 3, 'ppa' => (int) 6, 'ppe' => (int) 6, 'psa' => (int) 4, 'pso' => (int) 25, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 4, 'sbr' => (int) 2, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 8, 'sas' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 14, 'spe' => (int) 12, 'spa' => (int) 5, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 6, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 4, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb339990' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1